EGAE

EGAE employs ensemble-based genetic algorithms to generate segmentation-based explanations that identify informative regions in medical images for melanoma cancer detection.


Key Features:

  • Heuristic determination of chromosome sparsity: Heuristically determines chromosome sparsity to configure genetic algorithm representations for image segmentation.
  • Consecutive execution of multiple genetic algorithms: Executes multiple genetic algorithms consecutively with different numbers of superpixels, producing variations in chromosome length to explore segmentation alternatives.
  • Ensemble via consensus and majority voting: Ensembles outputs from multiple GAs using consensus and majority voting to integrate segmentation results.
  • Euclidean distance accuracy metric: Quantifies explanation accuracy by computing the Euclidean distance between expert-delineated ground-truth explanations and explainer-generated explanations.
  • Benchmarking against LIME: Evaluates explanation accuracy relative to Local Interpretable Model-agnostic Explanations (LIME) on melanoma datasets.
  • Automatic identification of informative regions: Uses the ensemble GA process to automatically identify and present informative sections of medical images.

Scientific Applications:

  • Melanoma cancer detection: Identifying informative lesions and supporting explanation of AI model decisions in melanoma image datasets.
  • Explainable medical imaging: Providing segmentation-based explanations to assess and improve interpretability of image-analysis models.
  • Comparative evaluation of explainers: Benchmarking and comparing explanation methods such as EGAE and LIME on annotated medical image datasets.

Methodology:

Three-phase process: heuristic determination of chromosome sparsity; consecutive execution of multiple genetic algorithms with varying superpixel counts yielding different chromosome lengths; ensembling of GA outputs via consensus and majority voting; accuracy measured by Euclidean distance to expert-delineated explanations.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
command-line tool
Programming Languages:
Python
Added:
3/19/2023
Last Updated:
11/24/2024

Operations

Publications

Nematzadeh H, García-Nieto J, Navas-Delgado I, Aldana-Montes JF. Ensemble-based genetic algorithm explainer with automized image segmentation: A case study on melanoma detection dataset. Computers in Biology and Medicine. 2023;155:106613. doi:10.1016/j.compbiomed.2023.106613. PMID:36764157.

PMID: 36764157
Funding: - Gobierno de España Ministerio de Ciencia e Innovación: PID2020-112540RB-C41