Emati
Emati recommends biomedical research articles using content-based machine learning to prioritize newly published literature for relevance.
Key Features:
- Content-Based Recommendation Approach: Emati analyzes document text directly and operates independently of the number of users.
- TF-IDF with Multinomial Naïve Bayes: Documents are converted into TF-IDF-weighted features used by a Multinomial Naïve Bayes classifier that outputs probability scores for relevance.
- BERT Language Model: Emati uses BERT (Bidirectional Encoder Representations from Transformers) fine-tuned for text classification to leverage deep contextual language understanding.
- Weekly Ranking by Probability Scores: The system produces weekly-updated lists of article recommendations ranked by classifier probability scores.
- Personalized Search of PubMed and arXiv: Emati performs searches of PubMed and arXiv and sorts the returned results according to classifier probability scores.
Scientific Applications:
- Literature discovery and triage: Automates identification and prioritization of relevant biomedical articles from newly published literature to support researchers, clinicians, and academics.
- Relevance-based monitoring of research developments: Ranks candidate articles to reduce time required for staying abreast of new biomedical research.
Methodology:
Content-based recommendation using TF-IDF vectorization and a Multinomial Naïve Bayes classifier that provides probability scores, BERT (Bidirectional Encoder Representations from Transformers) fine-tuned for text classification, queries to PubMed and arXiv, and weekly re-ranking of articles by classifier probability scores.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript, Python
- Added:
- 2/20/2023
- Last Updated:
- 2/20/2023
Operations
Data Inputs & Outputs
Sorting
Outputs
Publications
Kart Ö, Mestiashvili A, Lachmann K, Kwasnicki R, Schroeder M. Emati: a recommender system for biomedical literature based on supervised learning. Database. 2022;2022. doi:10.1093/database/baac104. PMID:36484479. PMCID:PMC9732843.
Links
Repository
https://github.com/bioinfcollab/emati