embossdata

embossdata provides discovery and retrieval of EMBOSS database files to support molecular biology data management and analysis.


Key Features:

  • Data Retrieval: Discovers and retrieves EMBOSS database files for use by EMBOSS applications.
  • Suite Integration: Operates within the EMBOSS suite and integrates with EMBOSS applications and third-party bioinformatics programs.
  • C Programming Libraries: Integrates with the EMBOSS C programming libraries to support development of bioinformatics tools.
  • ACD-based Customization: Supports tool definition and customization via ACD files.
  • API Programming: Provides API programming support for developing EMBOSS-compliant applications.
  • Portability and Wrapping: Facilitates wrapping and porting of third-party applications into the EMBOSS environment.

Scientific Applications:

  • Molecular Biology Data Management: Centralizes access to EMBOSS database files used in molecular biology research.
  • Sequence Analysis: Supplies database inputs for sequence analysis workflows within EMBOSS.
  • Structural Biology: Provides database access to support structural biology investigations.
  • Tool Development: Enables development and integration of new bioinformatics tools using EMBOSS C libraries, ACD files, and APIs.

Methodology:

Discovers and retrieves EMBOSS database files from configured EMBOSS database locations and provides mechanisms for wrapping and porting third-party applications into EMBOSS.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Data loading

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

Downloads

Links