embossdata
embossdata provides discovery and retrieval of EMBOSS database files to support molecular biology data management and analysis.
Key Features:
- Data Retrieval: Discovers and retrieves EMBOSS database files for use by EMBOSS applications.
- Suite Integration: Operates within the EMBOSS suite and integrates with EMBOSS applications and third-party bioinformatics programs.
- C Programming Libraries: Integrates with the EMBOSS C programming libraries to support development of bioinformatics tools.
- ACD-based Customization: Supports tool definition and customization via ACD files.
- API Programming: Provides API programming support for developing EMBOSS-compliant applications.
- Portability and Wrapping: Facilitates wrapping and porting of third-party applications into the EMBOSS environment.
Scientific Applications:
- Molecular Biology Data Management: Centralizes access to EMBOSS database files used in molecular biology research.
- Sequence Analysis: Supplies database inputs for sequence analysis workflows within EMBOSS.
- Structural Biology: Provides database access to support structural biology investigations.
- Tool Development: Enables development and integration of new bioinformatics tools using EMBOSS C libraries, ACD files, and APIs.
Methodology:
Discovers and retrieves EMBOSS database files from configured EMBOSS database locations and provides mechanisms for wrapping and porting third-party applications into EMBOSS.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Data loading
Outputs
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html