embossupdate
embossupdate updates EMBOSS installations to provide access to the latest enhancements, bug fixes, and new features for bioinformatics analyses such as sequence analysis and structure prediction.
Key Features:
- Integration with third-party software: Integrates over 200 third-party applications and software packages into the EMBOSS suite.
- Database configuration and management: Supports configuration and management of databases used within the EMBOSS framework.
- Development support: Provides C programming libraries, ACD file development facilities, and application programming interfaces (APIs) for developing EMBOSS applications.
- Portability and extensibility: Supports wrapping and porting of third-party applications into the EMBOSS environment.
Scientific Applications:
- Sequence analysis: Maintains up-to-date EMBOSS components used for nucleotide and protein sequence analysis workflows.
- Structure prediction: Ensures availability of current EMBOSS components relevant to structure prediction and related bioinformatics analyses.
Methodology:
Performs regular checks for new EMBOSS releases and updates within the suite.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Data retrieval
Outputs
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html