EnCurv
EnCurv maintains specified membrane curvature in lipid membranes during molecular dynamics (MD) simulations to enable accurate modeling of curvature-dependent membrane phenomena.
Key Features:
- Preservation of Desired Curvature: Maintains any specified curvature in a designated sector of a lipid membrane bent along a single plane without introducing unphysical interactions.
- Unrestricted Lipid Dynamics: Allows lateral and transversal diffusion and distribution of lipids to proceed without artificial constraints.
- Scalability: Scales linearly with system size, enabling efficient large-scale simulations.
- Force Field Agnosticism: Operates independently of specific force fields, simulation parameters, and membrane compositions.
Scientific Applications:
- Vesicle formation: Facilitates simulation of curvature-dependent stages of vesicle budding and fission.
- Protein–membrane interactions: Enables study of how membrane curvature influences binding, insertion, and activity of membrane-associated proteins.
- Membrane mechanics: Supports investigation of the mechanical properties of cellular membranes as a function of imposed curvature.
- Cell biology and biophysics research: Provides a framework for modeling curvature-related phenomena relevant to cell biology and biophysics.
Methodology:
The current implementation is tailored for membranes curved in a single plane and can be generalized conceptually to more complex curvatures and membrane topologies.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- command-line tool
- Programming Languages:
- C++
- Added:
- 3/19/2021
- Last Updated:
- 5/5/2021
Operations
Publications
Yesylevskyy S, Khandelia H. EnCurv: Simple Technique of Maintaining Global Membrane Curvature in Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 2021;17(2):1181-1193. doi:10.1021/acs.jctc.0c00800. PMID:33513017.
PMID: 33513017
Funding: - Novo Nordisk Fonden: NNF18OC0034936
- Lundbeckfonden: R82-2011-7280
- National Research Foundation of Ukraine: 2020.01/0043