Ensembl C.elegans Genome Browser
Ensembl C.elegans Genome Browser provides annotated genomic sequences and comparative genomics resources for Caenorhabditis elegans to support gene annotation, comparative analysis, and sequence-level investigation.
Key Features:
- Comprehensive annotation: Stable automatic annotation integrating confirmed gene predictions and external data sources for the C. elegans genome.
- Cross-species integration: Comparative genomics capabilities linking C. elegans data with other species within the Ensembl framework.
- External data integration: Support for incorporation of external datasets to augment genome annotation and analyses.
- Sequence analysis, storage, and visualization: Computational components for sequence analysis, large-scale data storage, and genomic data visualization.
Scientific Applications:
- Genomic research: Investigation of gene function, regulation, and evolution in Caenorhabditis elegans using annotated sequences and comparative data.
- Multi-layered data integration: Integration of external datasets to enable combined analyses across annotation, sequence, and comparative-genomics layers.
Methodology:
Built on a software engineering framework within Ensembl that handles large-scale genomic data and implements sequence analysis, data storage, and visualization components.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java, Perl, C
- Added:
- 3/30/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Hubbard T. The Ensembl genome database project. Nucleic Acids Research. 2002;30(1):38-41. doi:10.1093/nar/30.1.38. PMID:11752248. PMCID:PMC99161.