Ensembl C.elegans Genome Browser

Ensembl C.elegans Genome Browser provides annotated genomic sequences and comparative genomics resources for Caenorhabditis elegans to support gene annotation, comparative analysis, and sequence-level investigation.


Key Features:

  • Comprehensive annotation: Stable automatic annotation integrating confirmed gene predictions and external data sources for the C. elegans genome.
  • Cross-species integration: Comparative genomics capabilities linking C. elegans data with other species within the Ensembl framework.
  • External data integration: Support for incorporation of external datasets to augment genome annotation and analyses.
  • Sequence analysis, storage, and visualization: Computational components for sequence analysis, large-scale data storage, and genomic data visualization.

Scientific Applications:

  • Genomic research: Investigation of gene function, regulation, and evolution in Caenorhabditis elegans using annotated sequences and comparative data.
  • Multi-layered data integration: Integration of external datasets to enable combined analyses across annotation, sequence, and comparative-genomics layers.

Methodology:

Built on a software engineering framework within Ensembl that handles large-scale genomic data and implements sequence analysis, data storage, and visualization components.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Java, Perl, C
Added:
3/30/2017
Last Updated:
11/25/2024

Operations

Publications

Hubbard T. The Ensembl genome database project. Nucleic Acids Research. 2002;30(1):38-41. doi:10.1093/nar/30.1.38. PMID:11752248. PMCID:PMC99161.

Documentation