EOSC pipeline-Reproducibility
The described pipeline is aimed to replicate data stored at EGA generated by the GoNL consortium
Topics
Details
- License:
- Apache-1.0
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- command-line tool, workflow
- Operating Systems:
- Linux, Mac
- Programming Languages:
- Perl
- Added:
- 7/3/2018
- Last Updated:
- 6/16/2020
Operations
- Data retrieval
- Data retrieval
- Data retrieval
- Data retrieval
- Data retrieval
- Data retrieval
- Genome indexing
- Indexing
- Read mapping
- Sorting
- Indexing
- Sequence similarity search
- Indexing
- Sequence alignment refinement
- Sequence alignment refinement
- Sequence alignment refinement
- Indexing
- Modelling and simulation
- Sequence alignment refinement
- Sorting
- Indexing
- Modelling and simulation
- Visualisation
- Visualisation
Data Inputs & Outputs
Sequence alignment refinement
Inputs
Outputs
Other operations do not define inputs or outputs.
Downloads
- Source codehttps://github.com/CRG-CNAG/EOSC-PilotRepository of EOSC-Reproducibility pipeline