EOSC pipeline-Reproducibility
The described pipeline is aimed to replicate data stored at EGA generated by the GoNL consortium
Topics
Details
- License:
- Apache-1.0
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- command-line tool, workflow
- Operating Systems:
- Linux, Mac
- Programming Languages:
- Perl
- Added:
- 7/3/2018
- Last Updated:
- 6/16/2020
Operations
- Read mapping
- Indexing
- Data retrieval
- Data retrieval
- Sequence alignment refinement
- Genome indexing
- Data retrieval
- Sequence alignment refinement
- Sequence alignment refinement
- Modelling and simulation
- Modelling and simulation
- Sequence similarity search
- Sequence alignment refinement
- Indexing
- Indexing
- Indexing
- Sorting
- Sorting
- Visualisation
- Visualisation
- Indexing
- Data retrieval
- Data retrieval
- Data retrieval
Data Inputs & Outputs
Read mapping
Indexing
Outputs
Data retrieval
Inputs
Outputs
Data retrieval
Inputs
Outputs
Sequence alignment refinement
Genome indexing
Outputs
Sequence alignment refinement
Sequence alignment refinement
Modelling and simulation
Modelling and simulation
Sequence similarity search
Sequence alignment refinement
Indexing
Outputs
Indexing
Outputs
Indexing
Outputs
Sorting
Sorting
Visualisation
Visualisation
Indexing
Outputs
Data retrieval
Inputs
Outputs
Data retrieval
Inputs
Outputs
Data retrieval
Inputs
Outputs
Downloads
- Source codehttps://github.com/CRG-CNAG/EOSC-PilotRepository of EOSC-Reproducibility pipeline