EPEK
EPEK compiles and curates gene expression, metabolite, and single nucleotide polymorphism (SNP) data related to human ectopic pregnancy to support analysis of molecular signatures and potential biomarkers.
Key Features:
- Data types: Contains 314 differentially expressed genes, 17 metabolites, and 3 SNPs reported in human ectopic pregnancy expression studies.
- Curation: Entries were collected through manual curation of published human expression profiles linked to ectopic pregnancy.
- Analytical focus: Includes computational analyses that highlight the involvement of cellular signaling processes in ectopic pregnancy.
- Biomarker candidates: Pinpoints potential exosome markers associated with ectopic pregnancy that may have diagnostic relevance.
Scientific Applications:
- Biomarker identification: Supports identification and prioritization of exosome markers and other molecular biomarkers for ectopic pregnancy.
- Pathogenesis research: Enables investigation of genetic and molecular factors implicated in the development of ectopic pregnancy and associated cellular signaling alterations.
- Data-driven hypothesis generation: Provides a curated set of differentially expressed genes, metabolites, and SNPs for generating hypotheses about molecular mechanisms in human ectopic pregnancy.
Methodology:
Data were manually curated from published human expression studies and subjected to computational analyses to assess involvement of cellular signaling processes and to identify potential exosome markers.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- web application
- Programming Languages:
- Python, R
- Added:
- 4/20/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Natarajan A, Chivukula N, Dhanakoti GB, Sahoo AK, Ravichandran J, Samal A. EPEK: Creation and analysis of an Ectopic Pregnancy Expression Knowledgebase. Computational Biology and Chemistry. 2023;104:107866. doi:10.1016/j.compbiolchem.2023.107866. PMID:37030102.
PMID: 37030102
Links
Repository
https://github.com/asamallab/EPEK