EPEK

EPEK compiles and curates gene expression, metabolite, and single nucleotide polymorphism (SNP) data related to human ectopic pregnancy to support analysis of molecular signatures and potential biomarkers.


Key Features:

  • Data types: Contains 314 differentially expressed genes, 17 metabolites, and 3 SNPs reported in human ectopic pregnancy expression studies.
  • Curation: Entries were collected through manual curation of published human expression profiles linked to ectopic pregnancy.
  • Analytical focus: Includes computational analyses that highlight the involvement of cellular signaling processes in ectopic pregnancy.
  • Biomarker candidates: Pinpoints potential exosome markers associated with ectopic pregnancy that may have diagnostic relevance.

Scientific Applications:

  • Biomarker identification: Supports identification and prioritization of exosome markers and other molecular biomarkers for ectopic pregnancy.
  • Pathogenesis research: Enables investigation of genetic and molecular factors implicated in the development of ectopic pregnancy and associated cellular signaling alterations.
  • Data-driven hypothesis generation: Provides a curated set of differentially expressed genes, metabolites, and SNPs for generating hypotheses about molecular mechanisms in human ectopic pregnancy.

Methodology:

Data were manually curated from published human expression studies and subjected to computational analyses to assess involvement of cellular signaling processes and to identify potential exosome markers.

Topics

Details

License:
MIT
Cost:
Free of charge (with restrictions)
Tool Type:
web application
Programming Languages:
Python, R
Added:
4/20/2023
Last Updated:
11/24/2024

Operations

Publications

Natarajan A, Chivukula N, Dhanakoti GB, Sahoo AK, Ravichandran J, Samal A. EPEK: Creation and analysis of an Ectopic Pregnancy Expression Knowledgebase. Computational Biology and Chemistry. 2023;104:107866. doi:10.1016/j.compbiolchem.2023.107866. PMID:37030102.

Links