epivizrServer
epivizrServer manages WebSocket connections to deliver real-time genomic data from R/Bioconductor to epiviz applications for interactive exploration and analysis.
Key Features:
- WebSocket Management: Manages WebSocket connections to provide real-time data exchange between server-side R objects and epiviz clients.
- Integration with Bioconductor: Implements as a Bioconductor package in R, enabling use of Bioconductor data structures and interoperability with Bioconductor packages.
- Interoperability: Streams genomic datasets to and from epiviz and interoperates with other Bioconductor packages to support downstream analyses.
Scientific Applications:
- Genomic Data Exploration: Enables exploration of large-scale genomic datasets within epiviz by streaming data for pattern discovery.
- Interactive Analysis: Supports interactive analysis workflows by delivering real-time data updates to epiviz.
Methodology:
Implements WebSocket-based real-time data exchange within R, operating as a Bioconductor package to serve data to epiviz applications.
Topics
Collections
Details
- License:
- MIT
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.