epivizrStandalone

epivizrStandalone provides interactive visualization of genomic data within R by integrating the 'epiviz' JavaScript application with Bioconductor genome annotations and the epivizrServer web server.

Key Features:

• Interactive visualization engine: integrates the 'epiviz' JavaScript application to render dynamic genomic visualizations.
• R-based web server: uses the epivizrServer R package to host visualization services entirely within R.
• Genome browsing with Bioconductor annotations: supports browsing arbitrary genomes using genome annotations provided by Bioconductor packages.
• Bioconductor interoperability: interoperates with the Bioconductor ecosystem of 934 interoperable packages for bioinformatic and statistical analyses.
• Quality assurance of dependencies: relies on Bioconductor packages that undergo formal initial review and continuous automated testing.

Scientific Applications:

• Exploration of high-throughput genomics data: visualize genomic tracks and regions for interpretation of sequencing-derived datasets.
• Integration with statistical workflows: combine interactive genomic visualizations with R-based statistical analyses from Bioconductor packages.
• Support for genomic and molecular biology research: enable visualization-driven interpretation for genomicists and molecular biologists.

Methodology:

Runs an epivizrServer web server within R, embeds the 'epiviz' JavaScript application for visualization, and sources genome annotations from Bioconductor packages.