ESIDE

ESIDE classifies earthworm species, including Eisenia fetida, from digital images using machine learning for accurate taxonomic identification.


Key Features:

  • Machine learning classification: Uses machine learning models applied to digital images to classify earthworm species including Eisenia fetida.
  • Validation framework: Performance was assessed using 10-fold cross-validation and validation on an external dataset.
  • Expert evaluation: Efficacy was tested in real-world settings with involvement of experienced taxonomists.
  • Performance: Demonstrates state-of-the-art species identification results compared to traditional morphological methods.

Scientific Applications:

  • Ecological research: Provides precise taxonomic identifications to support studies of earthworms as ecosystem engineers affecting organic matter recycling, nutrient availability, and soil structure.
  • Biodiversity studies: Enables efficient classification of earthworm species to support biodiversity assessments and conservation efforts.

Methodology:

Digital imaging combined with machine learning algorithms was used for classification, with performance assessed by 10-fold cross-validation and validated on an external dataset.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
3/3/2022
Last Updated:
3/3/2022

Operations

Publications

Andleeb S, Abbasi WA, Ghulam Mustafa R, Islam Gu, Naseer A, Shafique I, Parween A, Shaheen B, Shafiq M, Altaf M, Ali Abbas S. ESIDE: A computationally intelligent method to identify earthworm species (E. fetida) from digital images: Application in taxonomy. PLOS ONE. 2021;16(9):e0255674. doi:10.1371/journal.pone.0255674. PMID:34529673. PMCID:PMC8445633.

PMID: 34529673
PMCID: PMC8445633
Funding: - Higher Education Commission, Pakistan: NRPU-2907 & TDF-02006

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