ESIDE
ESIDE classifies earthworm species, including Eisenia fetida, from digital images using machine learning for accurate taxonomic identification.
Key Features:
- Machine learning classification: Uses machine learning models applied to digital images to classify earthworm species including Eisenia fetida.
- Validation framework: Performance was assessed using 10-fold cross-validation and validation on an external dataset.
- Expert evaluation: Efficacy was tested in real-world settings with involvement of experienced taxonomists.
- Performance: Demonstrates state-of-the-art species identification results compared to traditional morphological methods.
Scientific Applications:
- Ecological research: Provides precise taxonomic identifications to support studies of earthworms as ecosystem engineers affecting organic matter recycling, nutrient availability, and soil structure.
- Biodiversity studies: Enables efficient classification of earthworm species to support biodiversity assessments and conservation efforts.
Methodology:
Digital imaging combined with machine learning algorithms was used for classification, with performance assessed by 10-fold cross-validation and validated on an external dataset.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 3/3/2022
- Last Updated:
- 3/3/2022
Operations
Publications
Andleeb S, Abbasi WA, Ghulam Mustafa R, Islam Gu, Naseer A, Shafique I, Parween A, Shaheen B, Shafiq M, Altaf M, Ali Abbas S. ESIDE: A computationally intelligent method to identify earthworm species (E. fetida) from digital images: Application in taxonomy. PLOS ONE. 2021;16(9):e0255674. doi:10.1371/journal.pone.0255674. PMID:34529673. PMCID:PMC8445633.
PMID: 34529673
PMCID: PMC8445633
Funding: - Higher Education Commission, Pakistan: NRPU-2907 & TDF-02006
Links
Repository
https://github.com/wajidarshad/ESIDE