EthoLoop
EthoLoop enables real-time optical tracking and deep-learning behavioral analysis of freely roaming animals to study neuroethology, spatial navigation, and hippocampal place-cell-like activity in naturalistic three-dimensional or nocturnal environments.
Key Features:
- Real-time optical tracking: Performs continuous optical tracking of animals in naturalistic, three-dimensional and nocturnal environments.
- 3D tracking technology: Computes three-dimensional trajectories of subjects for spatial analyses.
- Deep-learning behavioral analysis: Applies deep-learning methods for high-resolution interpretation of behavior from continuous close-up views.
- Continuous close-up views: Captures sustained close-up imaging of tracked individuals to enable detailed behavioral monitoring.
- Remote-controlled stimulus-reward boxes: Integrates remote-controlled boxes to deliver stimuli and rewards for classical conditioning and optogenetic stimulation.
- Wirelessly controlled portable devices: Uses wirelessly controlled portable devices to trigger interactions and stimuli in the field.
- Integration with wireless neurophysiology: Combines 3D tracking data with wireless neurophysiology recordings to correlate behavior and neural activity.
- Demonstrated hippocampal place-cell-like activity: Has been used to reveal place-cell-like activity in the hippocampus of freely moving primates.
Scientific Applications:
- Neuroethology in freely roaming animals: Quantifies naturalistic behavior and interactions in three-dimensional or nocturnal settings.
- Spatial navigation and memory: Maps spatial navigation and memory-related hippocampal activity, including place-cell-like responses in primates.
- Behavior–neural correlation: Correlates three-dimensional movement trajectories with wireless neurophysiology recordings.
- Closed-loop conditioning and optogenetics: Implements behavior-contingent classical conditioning and optogenetic stimulation in naturalistic environments.
Methodology:
Real-time optical tracking and three-dimensional tracking are combined with deep-learning behavioral analysis, and tracking data are integrated with wireless neurophysiology recordings.
Topics
Details
- License:
- LGPL-3.0
- Tool Type:
- workflow
- Programming Languages:
- C++
- Added:
- 1/18/2021
- Last Updated:
- 3/8/2021
Operations
Publications
Nourizonoz A, Zimmermann R, Ho CLA, Pellat S, Ormen Y, Prévost-Solié C, Reymond G, Pifferi F, Aujard F, Herrel A, Huber D. EthoLoop: automated closed-loop neuroethology in naturalistic environments. Nature Methods. 2020;17(10):1052-1059. doi:10.1038/s41592-020-0961-2. PMID:32994566.
Downloads
- Downloads pagehttp://www.etholoop.org/Downloads.html