Eucalyptus Multi-omics Database (EucaMOD)

EucaMOD integrates genomics, transcriptomics, epigenetics, and variomics data for 45 Eucalyptus genomes to support functional genomics research and molecular breeding of fast-growing eucalyptus trees.

Key Features:

• Genome Annotation: Functional annotation of 45 eucalyptus genomes and structural annotation of 15 genomes.
• Comparative Genomics: Cross-species comparative genomics analysis across all 45 genomes.
• Pan-proteomics: Pan-proteomics analysis across all annotated genomes.
• Transcriptomics: Analysis of 870 mRNA-seq samples and 17 miRNA-seq samples through standardized workflows.
• Epigenetics: Analysis of 52 epigenomic datasets including histone modifications and transcription factor binding.
• Variomics: Genetic variation data analysis from 1219 samples.
• Online Analysis Tools: Data mining tools for gene function and genetic engineering studies.

Scientific Applications:

• Functional Genomics Research: In-depth mining and reanalysis of multi-omics datasets to elucidate eucalyptus gene function.
• Molecular Breeding: Support for genetic breeding efforts through systematic analysis of multi-omics data across Eucalyptus species.
• Genetic Engineering: Aiding studies on eucalyptus gene function and genetic modification.
• Cross-omics Studies: Integration of genome, transcriptome, epigenome, and variome data for comprehensive biological insights.

Methodology:

Standardized workflows were used to analyze transcriptome, epigenome, and variome data; comparative genomics and pan-proteomics analyses were conducted across all genomes.