EviCor
EviCor integrates TCGA and CCLE omics datasets with drug response profiles to compute drug–feature correlations and support multivariate analyses of molecular determinants of anti-cancer drug response.
Key Features:
- Data integration and processing: Integration of omics datasets from TCGA and CCLE and processing into a server-side database for retrieval and analysis.
- Pre-computed drug-feature correlation tables: Generation and storage of drug–feature correlation tables linking molecular features to anti-cancer drug responses.
- Phenotype–molecular relationship analysis: Analytical support for relationships among phenotype, single-molecule, and pathway variables using statistical analyses and network analysis tools.
- Multivariate model building: Support for construction of custom multivariate models to evaluate combinations of molecular features against drug response.
- Programmatic access: REST interface for programmatic retrieval of processed data and pre-computed correlation results.
Scientific Applications:
- Cancer drug response analysis: Correlating molecular features with responses to anti-cancer drugs across cell lines and tumor cohorts.
- Biomarker discovery: Identifying candidate molecular biomarkers associated with sensitivity or resistance to specific drugs.
- Therapeutic target identification: Linking pathway- and single-molecule-level alterations to potential therapeutic targets informed by drug response correlations.
- Genotype–outcome correlation studies: Using TCGA and CCLE datasets to uncover correlations between genetic variation and treatment outcomes.
Methodology:
Integration of multiple independent data sources (including TCGA and CCLE), processing and storage in a server-side database, pre-computation of drug–feature correlation tables, and support for statistical analyses, network analysis, and custom multivariate model construction.
Topics
Details
- License:
- Other
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript, Perl
- Added:
- 9/14/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Petrov I, Alexeyenko A. EviCor: Interactive Web Platform for Exploration of Molecular Features and Response to Anti-cancer Drugs. Journal of Molecular Biology. 2022;434(11):167528. doi:10.1016/j.jmb.2022.167528. PMID:35662462.