EWAS Catalog
EWAS Catalog curates and aggregates epigenome-wide association study (EWAS) results linking DNA methylation at CpG sites to traits and exposures.
Key Features:
- Scope: Contains 1,737,746 associations derived from 2,686 distinct EWAS.
- Publication-derived data: Includes 1,345,398 associations sourced from 342 peer‑reviewed publications.
- Summary statistics: Provides summary statistics for 392,348 associations from 427 EWAS conducted on datasets such as ALSPAC and GEO.
- Measurement coverage: Captures DNA methylation measurements at thousands to millions of CpG sites.
- Significance filtering: Catalogs CpG–trait associations filtered at p<1x10^-4.
- Study types: Aggregates results from population‑based cohorts and case‑control studies.
Scientific Applications:
- Association discovery: Identify CpG–trait and CpG–exposure associations across the genome.
- Disease mechanism exploration: Investigate molecular mechanisms underlying diseases via methylation–trait associations.
- Epigenetic epidemiology: Compare EWAS results across cohorts and study designs to assess methylation signatures of traits and exposures.
Methodology:
Aggregates curated CpG–trait associations and summary statistics extracted from peer‑reviewed publications and EWAS datasets (e.g., ALSPAC, GEO) and retains associations meeting a p<1x10^-4 threshold.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- library, web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R, Python
- Added:
- 8/23/2022
- Last Updated:
- 8/23/2022
Operations
Publications
Battram T, Yousefi P, Crawford G, Prince C, Sheikhali Babaei M, Sharp G, Hatcher C, Vega-Salas MJ, Khodabakhsh S, Whitehurst O, Langdon R, Mahoney L, Elliott HR, Mancano G, Lee MA, Watkins SH, Lay AC, Hemani G, Gaunt TR, Relton CL, Staley JR, Suderman M. The EWAS Catalog: a database of epigenome-wide association studies. Wellcome Open Research. 2022;7:41. doi:10.12688/wellcomeopenres.17598.2. PMID:35592546. PMCID:PMC9096146.