EWAS Catalog

EWAS Catalog curates and aggregates epigenome-wide association study (EWAS) results linking DNA methylation at CpG sites to traits and exposures.


Key Features:

  • Scope: Contains 1,737,746 associations derived from 2,686 distinct EWAS.
  • Publication-derived data: Includes 1,345,398 associations sourced from 342 peer‑reviewed publications.
  • Summary statistics: Provides summary statistics for 392,348 associations from 427 EWAS conducted on datasets such as ALSPAC and GEO.
  • Measurement coverage: Captures DNA methylation measurements at thousands to millions of CpG sites.
  • Significance filtering: Catalogs CpG–trait associations filtered at p<1x10^-4.
  • Study types: Aggregates results from population‑based cohorts and case‑control studies.

Scientific Applications:

  • Association discovery: Identify CpG–trait and CpG–exposure associations across the genome.
  • Disease mechanism exploration: Investigate molecular mechanisms underlying diseases via methylation–trait associations.
  • Epigenetic epidemiology: Compare EWAS results across cohorts and study designs to assess methylation signatures of traits and exposures.

Methodology:

Aggregates curated CpG–trait associations and summary statistics extracted from peer‑reviewed publications and EWAS datasets (e.g., ALSPAC, GEO) and retains associations meeting a p<1x10^-4 threshold.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
library, web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R, Python
Added:
8/23/2022
Last Updated:
8/23/2022

Operations

Publications

Battram T, Yousefi P, Crawford G, Prince C, Sheikhali Babaei M, Sharp G, Hatcher C, Vega-Salas MJ, Khodabakhsh S, Whitehurst O, Langdon R, Mahoney L, Elliott HR, Mancano G, Lee MA, Watkins SH, Lay AC, Hemani G, Gaunt TR, Relton CL, Staley JR, Suderman M. The EWAS Catalog: a database of epigenome-wide association studies. Wellcome Open Research. 2022;7:41. doi:10.12688/wellcomeopenres.17598.2. PMID:35592546. PMCID:PMC9096146.

PMID: 35592546
PMCID: PMC9096146
Funding: - Medical Research Council: 217065/Z/19/Z, MC_UU_00011/1, MC_UU_00011/4, MC_UU_12013/1, MC_UU_12013/2, MC_UU_12013/4 - British Heart Foundation: SP/07/008/24066 - Biotechnology and Biological Sciences Research Council: BB/I025263/1, BB/I025751/1, ES/N000498/1 - Economic and Social Research Council: ES/N000498/1 - National Institute for Health Research: NF-SI-0611-10196 - Wellcome Trust: 203746

Links