export_one_data

export_one_data exports a single dataset from a Galaxy history for external use and downstream analysis.


Key Features:

  • Data Duplication Warning: Alerts to duplication of data during export to help identify redundant files.
  • Integration with Galaxy Project: Operates within the Galaxy project's infrastructure and accesses history-stored datasets together with their associated analysis provenance.
  • Dataset Export for External Analysis: Enables exportation of individual datasets from Galaxy histories for sharing or downstream analysis outside the Galaxy environment.

Scientific Applications:

  • Data Management: Permits extraction of specific datasets to manage redundancy and storage usage.
  • Reproducibility and Transparency: Preserves metadata and analysis details to support reproducibility and transparency of computational analyses.
  • Large-scale Sequencing and High-throughput Data: Supports export of datasets generated by next-generation DNA sequencing and other high-throughput technologies for downstream analysis or sharing.

Methodology:

Integrates with the Galaxy project's infrastructure to export a single dataset while preserving associated metadata and analysis details and issuing a duplication warning when redundant data are encountered.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Data retrieval

Inputs

Outputs

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Documentation

Links