export_one_data
export_one_data exports a single dataset from a Galaxy history for external use and downstream analysis.
Key Features:
- Data Duplication Warning: Alerts to duplication of data during export to help identify redundant files.
- Integration with Galaxy Project: Operates within the Galaxy project's infrastructure and accesses history-stored datasets together with their associated analysis provenance.
- Dataset Export for External Analysis: Enables exportation of individual datasets from Galaxy histories for sharing or downstream analysis outside the Galaxy environment.
Scientific Applications:
- Data Management: Permits extraction of specific datasets to manage redundancy and storage usage.
- Reproducibility and Transparency: Preserves metadata and analysis details to support reproducibility and transparency of computational analyses.
- Large-scale Sequencing and High-throughput Data: Supports export of datasets generated by next-generation DNA sequencing and other high-throughput technologies for downstream analysis or sharing.
Methodology:
Integrates with the Galaxy project's infrastructure to export a single dataset while preserving associated metadata and analysis details and issuing a duplication warning when redundant data are encountered.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.