export_sbw

export_sbw exports and manages historical SynBioWatch project and user-activity data to support archival, analysis, and reproducibility of datasets generated by high-throughput technologies such as next-generation DNA sequencing.


Key Features:

  • Data Export Capability: Exports historical SynBioWatch project and user-activity datasets for archival and downstream analysis.
  • Integration with Galaxy Project Framework: Integrates with the Galaxy project framework to operate within Galaxy's computational environment.
  • Automated Tracking: Automatically records metadata and logs of computational analyses for inspection, publication, and reuse.
  • Scalability for Biomedical Analyses: Supports large-scale biomedical analyses, accommodating datasets from high-throughput technologies such as next-generation DNA sequencing.

Scientific Applications:

  • Biomedical Research: Facilitates archival, retrieval, and analysis of SynBioWatch datasets to support biomedical research.
  • Reproducibility and Transparency: Provides documented computational logs and metadata in Galaxy to support reproducibility and transparency of analyses.
  • Educational Use: Acts as an educational resource for training researchers in bioinformatics methodologies.

Methodology:

Operates within the Galaxy project framework and automatically logs computational analyses and associated metadata.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Documentation

Links