export_sbw

export_sbw exports and manages historical SynBioWatch project and user-activity data to support archival, analysis, and reproducibility of datasets generated by high-throughput technologies such as next-generation DNA sequencing.


Key Features:

  • Data Export Capability: Exports historical SynBioWatch project and user-activity datasets for archival and downstream analysis.
  • Integration with Galaxy Project Framework: Integrates with the Galaxy project framework to operate within Galaxy's computational environment.
  • Automated Tracking: Automatically records metadata and logs of computational analyses for inspection, publication, and reuse.
  • Scalability for Biomedical Analyses: Supports large-scale biomedical analyses, accommodating datasets from high-throughput technologies such as next-generation DNA sequencing.

Scientific Applications:

  • Biomedical Research: Facilitates archival, retrieval, and analysis of SynBioWatch datasets to support biomedical research.
  • Reproducibility and Transparency: Provides documented computational logs and metadata in Galaxy to support reproducibility and transparency of analyses.
  • Educational Use: Acts as an educational resource for training researchers in bioinformatics methodologies.

Methodology:

Operates within the Galaxy project framework and automatically logs computational analyses and associated metadata.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Data retrieval

Inputs

    Publications

    Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

    Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

    Documentation

    Links