EXSIMO

EXSIMO integrates models, data, and code within an automated execution environment to enable reproducible computational simulations across platforms.

Key Features:

• Models, Data, and Code: Encapsulates models, datasets, parameters, and scripts required to execute simulations.
• Testing Frameworks: Incorporates testing mechanisms for models, data, and code to ensure accuracy and reliability of simulation outcomes.
• Automation Layer: Automates execution of tests and analyses to streamline computational workflows.
• Version Control: Tracks changes in models, data, and code to preserve provenance and transparency.
• Annotations and Units: Provides detailed annotations and standardized units for simulation components.
• Continuous Integration and Release: Automates testing and release processes to maintain quality across the analysis lifecycle.

Scientific Applications:

• Replication of hepatic glucose metabolism in the liver: Used to reproduce a study of hepatic glucose metabolism in the liver, demonstrating reproducible and verifiable simulation results.

Methodology:

Integrates models, data, and code within an automated execution environment; applies testing frameworks to models, data, and code; uses an automation layer to execute tests and analyses; and employs version control, annotations and units, and continuous integration and release.