ezTree

ezTree is a Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes. This script is used to get single copy marker genes from a set of genomes, including genome bins recovered from metagenomes, and align them for phylogenetic tree reconstruction.

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Topics

Phylogenetics Sequence analysis

Details

License:: GPL-3.0
Cost:: Free of charge
Tool Type:: command-line tool
Programming Languages:: Perl
Added:: 3/21/2022
Last Updated:: 3/21/2022

Operations

DNA barcoding
Phylogenetic inference
Read binning

Documentation

Training material

https://github.com/yuwwu/ezTree/blob/master/Tutorial.pdf

Links

Issue tracker

https://github.com/yuwwu/ezTree/issues

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