FAIRSCAPE

FAIRSCAPE implements provenance recording, Evidence Graph construction, persistent identifier assignment, and FAIR metadata annotation to enable transparent, reproducible computational research and generation of FAIR Evidence.


Key Features:

  • Provenance Tracking: Records provenance of datasets, software, and computations including runtime parameters, environmental settings, and personnel contributions.
  • Evidence Graphs: Constructs an Evidence Graph for each computational result linking persistent identifiers and rich metadata for software, computations, and datasets and storing a URI to the graph root in the result metadata.
  • Ontology Support: Employs the EVI ontology (https://w3id.org/EVI) to support inferential reasoning over Evidence Graphs.
  • Workflow Management: Manages nested and disjoint workflows while preserving provenance across Apache Spark jobs, scripts, and user-supplied containers.
  • Persistent Identifiers: Assigns persistent identifiers to all objects, including software components, to enable unique long-term referencing.
  • FAIR Metadata Annotation: Annotates results with FAIR-compliant metadata using the Evidence Graph model to enhance accessibility, validation, reproducibility, and reusability.

Scientific Applications:

  • Large-scale computational analyses: Supports large-scale computational analyses where transparency and reproducibility are critical.
  • Cross-disciplinary data processing: Documents and archives computational processes across diverse disciplines that rely on complex data processing workflows.

Methodology:

Records detailed metadata (runtime parameters, environment, personnel), constructs Evidence Graphs with persistent identifiers and a URI to the graph root, applies the EVI ontology for inferential reasoning, manages nested and disjoint workflows including Apache Spark jobs, scripts, and user-supplied containers, and annotates results with FAIR-compliant metadata.

Topics

Details

Tool Type:
workflow
Added:
1/18/2021
Last Updated:
3/10/2021

Operations

Publications

Levinson MA, Niestroy J, Manir SA, Fairchild K, Lake DE, Moorman JR, Clark T. FAIRSCAPE: A Framework for FAIR and Reproducible Biomedical Analytics. Unknown Journal. 2020. doi:10.1101/2020.08.10.244947.

Documentation