FangNet

FangNet extracts and analyzes hidden knowledge from traditional Chinese medicine (TCM) clinical empirical prescriptions using network pharmacology and bioinformatics to identify key herbs and their symptom associations.


Key Features:

  • Network-based Herb Ranking: Applies a structure network algorithm based on PageRank to rank herbs by topological importance within symptom-herb networks derived from clinical empirical prescriptions.
  • Herb-Herb Co-occurrence Analysis: Detects and quantifies patterns of co-occurrence among herbs across clinical formulas to reveal frequently paired herbs and potential synergistic combinations.
  • Symptom-Herb Association Mapping: Maps herbs to specific symptoms from clinical prescriptions to characterize therapeutic roles and associations within the symptom-herb network.
  • Symptom-Herb Repository: Constructs a centralized collection of symptom-herb connections to support identification of biologically active ingredients and exploration of therapeutic hypotheses.
  • Network Pharmacology and Bioinformatics Integration: Integrates network pharmacology and bioinformatics analyses to interpret complex herbal combinations and prioritize herbs for further study.

Scientific Applications:

  • TCM Formula Mining: Systematically analyzes clinical empirical prescriptions to identify core herbal components within traditional Chinese medicine formulas.
  • Active Ingredient Discovery: Prioritizes herbs based on network-derived importance to guide targeted isolation and characterization of biologically active compounds.
  • Symptom-to-Herb Translation: Maps symptom associations to herbs to support research into symptom-targeted therapeutic strategies and multi-component treatments for complex diseases.

Methodology:

FangNet constructs a symptom-herb network from clinical empirical prescriptions and applies the PageRank algorithm to quantify each herb's relative importance and to reveal herb co-occurrence patterns and associations with specific symptoms.

Topics

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
3/10/2021

Operations

Publications

Bu D, Xia Y, Zhang J, Cao W, Huo P, Wang Z, He Z, Ding L, Wu Y, Zhang S, Gao K, Yu H, Liu T, Ding X, Gu X, Zhao Y. FangNet: Mining herb hidden knowledge from TCM clinical effective formulas using structure network algorithm. Computational and Structural Biotechnology Journal. 2021;19:62-71. doi:10.1016/j.csbj.2020.11.036. PMID:33363710. PMCID:PMC7753081.

Links