FC_analysis
FC_analysis analyzes Atomic Force Microscopy (AFM) force curves and force volume maps to generate elasticity and deformability images for nanomechanical characterization of samples.
Key Features:
- Automatic Analysis: Processes single force curves and entire force volume maps to produce elasticity and deformability images.
- Adaptability: Accepts user-specified detector sensitivity, scanner-z sensitivity, cantilever elastic constant, and map acquisition modality for analysis.
- Customizable Methodologies: Supports multiple analysis methodologies with adjustable fitting parameters and stepwise control of the analysis procedure.
- Rectangular Image Analysis: Analyzes rectangular portions of images to enable localized assessment of inhomogeneous samples.
- Young’s Modulus Mapping: Reconstructs Young’s modulus maps at different penetration depths to enable force tomography.
Scientific Applications:
- Nanomechanical characterization: Quantifies elasticity, stiffness, and adhesion of biological specimens from AFM data.
- Depth-resolved profiling (force tomography): Maps mechanical properties as a function of penetration depth using Young’s modulus reconstructions.
- Localized analysis of inhomogeneous samples: Performs subregion mechanical mapping via rectangular image analysis.
- Integration with topography: Couples mechanical property maps with high-resolution topographic reconstructions for combined analysis.
Methodology:
Processes AFM force curves and force volume maps to generate elasticity and deformability images; applies detector sensitivity, scanner-z sensitivity, and cantilever elastic constant values; performs fitting with adjustable parameters across supported analysis methodologies; analyzes rectangular image regions; reconstructs Young’s modulus maps at different penetration depths (force tomography) and couples mechanical property maps with topographic reconstructions.
Topics
Details
- Tool Type:
- plugin
- Operating Systems:
- Windows
- Programming Languages:
- MATLAB
- Added:
- 7/29/2018
- Last Updated:
- 6/16/2020
Operations
Publications
Dinarelli S, Girasole M, Longo G. FC_analysis: a tool for investigating atomic force microscopy maps of force curves. BMC Bioinformatics. 2018;19(1). doi:10.1186/s12859-018-2265-4. PMID:29976136. PMCID:PMC6034258.