featmerge

featmerge merges two overlapping feature tables into a single cohesive table, facilitating streamlined data analysis and interpretation in bioinformatics research.


Key Features:

  • Merging of overlapping feature tables: Combines two overlapping feature tables into a single cohesive table preserving feature coordinates and overlaps.
  • Integration with EMBOSS: Operates as part of the EMBOSS suite and is compatible with EMBOSS third-party integration and packages.

Scientific Applications:

  • Genomic Analysis: Produces a unified view of overlapping genomic features such as genes and regulatory elements to support sequence annotation and analysis.
  • Data Integration: Consolidates heterogeneous feature tables from multiple sources to generate coherent datasets for downstream bioinformatics workflows.

Methodology:

Implemented using EMBOSS C programming libraries; supports customization via ACD (Application Configuration Definition) files; follows EMBOSS API programming guidelines.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Publications

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Documentation

Downloads

Links