FGDB

FGDB catalogs and analyzes glycans attached to human Follicle Stimulating Hormone (FSH) to support glycomics research on FSH glycoforms and their biological roles.


Key Features:

  • Comprehensive Glycan Repository: Contains curated collections of fucosylated and non-fucosylated glycans linked to human FSH with detailed structural information and related data.
  • Integrated Analytical Tools: Provides functionalities for glycan abundance analysis and comparative studies using experimental data.
  • Automated Pipelines for Glycan Structure Prediction: Implements automated pipelines that predict possible glycan structures and FSH variants from input data.
  • Support for Glycoanalytical and Translational Studies: Centralizes FSH glycome data to enable investigation of glycoform roles in reproductive biology and disease contexts such as osteoporosis.

Scientific Applications:

  • FSH Glycome Characterization: Describe composition and structural variation of glycans attached to FSH.
  • Functional Glycosylation Studies: Assess how variations in FSH glycosylation affect biological activity and gonadal regulation.
  • Disease Association Analyses: Investigate links between FSH glycosylation patterns and conditions such as osteoporosis.
  • Comparative and Quantitative Glycomics: Perform abundance comparisons and comparative analyses across experimental samples and conditions.
  • Translational Research Support: Inform biochemical and therapeutic research related to FSH glycoforms.

Methodology:

Integrates high-throughput mass spectrometry-derived glycomic data with bioinformatics and automated pipelines for glycan structure prediction, glycan abundance analysis, and comparative studies.

Topics

Details

Tool Type:
web application
Added:
9/8/2021
Last Updated:
9/13/2021

Operations

Publications

Shakyawar SK, Pandey S, Harvey DJ, Bousfield G, Guda C. FGDB: Database of follicle stimulating hormone glycans. Computational and Structural Biotechnology Journal. 2021;19:1635-1640. doi:10.1016/j.csbj.2021.03.009. PMID:33897975. PMCID:PMC8050109.