FGDB
FGDB catalogs and analyzes glycans attached to human Follicle Stimulating Hormone (FSH) to support glycomics research on FSH glycoforms and their biological roles.
Key Features:
- Comprehensive Glycan Repository: Contains curated collections of fucosylated and non-fucosylated glycans linked to human FSH with detailed structural information and related data.
- Integrated Analytical Tools: Provides functionalities for glycan abundance analysis and comparative studies using experimental data.
- Automated Pipelines for Glycan Structure Prediction: Implements automated pipelines that predict possible glycan structures and FSH variants from input data.
- Support for Glycoanalytical and Translational Studies: Centralizes FSH glycome data to enable investigation of glycoform roles in reproductive biology and disease contexts such as osteoporosis.
Scientific Applications:
- FSH Glycome Characterization: Describe composition and structural variation of glycans attached to FSH.
- Functional Glycosylation Studies: Assess how variations in FSH glycosylation affect biological activity and gonadal regulation.
- Disease Association Analyses: Investigate links between FSH glycosylation patterns and conditions such as osteoporosis.
- Comparative and Quantitative Glycomics: Perform abundance comparisons and comparative analyses across experimental samples and conditions.
- Translational Research Support: Inform biochemical and therapeutic research related to FSH glycoforms.
Methodology:
Integrates high-throughput mass spectrometry-derived glycomic data with bioinformatics and automated pipelines for glycan structure prediction, glycan abundance analysis, and comparative studies.
Topics
Details
- Tool Type:
- web application
- Added:
- 9/8/2021
- Last Updated:
- 9/13/2021
Operations
Publications
Shakyawar SK, Pandey S, Harvey DJ, Bousfield G, Guda C. FGDB: Database of follicle stimulating hormone glycans. Computational and Structural Biotechnology Journal. 2021;19:1635-1640. doi:10.1016/j.csbj.2021.03.009. PMID:33897975. PMCID:PMC8050109.