Fibro-CoSANet

Fibro-CoSANet predicts prognosis of idiopathic pulmonary fibrosis (IPF) by modeling decline in forced vital capacity (FVC) from computed tomography (CT) images and demographic data using a multi-modal deep learning approach.


Key Features:

  • End-to-end multi-modal learning: Integrates CT images and demographic information within a single trainable model.
  • Data modalities: Uses computed tomography (CT) imaging paired with patient demographic data as inputs.
  • Model architecture: Implements a convolutional neural network (CNN) framework for feature extraction and prediction.
  • Attention mechanism: Incorporates a stacked attention layer to focus feature extraction on relevant data regions.
  • Prediction target: Predicts decline in forced vital capacity (FVC) to estimate IPF prognosis.
  • Validation dataset: Evaluated on the OSIC Pulmonary Fibrosis Progression Dataset.
  • Evaluation metric: Reported a modified Laplace log-likelihood score of -6.68.
  • Deep learning approach: Leverages deep learning to jointly process complex medical imaging and demographic features.

Scientific Applications:

  • IPF prognosis: Estimates disease progression in idiopathic pulmonary fibrosis via FVC decline prediction.
  • Clinical decision support: Provides quantitative prognostic estimates to inform treatment planning.
  • Research on disease dynamics: Supports investigation of progression patterns and personalized treatment strategies in pulmonary fibrosis.

Methodology:

End-to-end multi-modal convolutional neural network integrating CT images and demographic information, augmented with a stacked attention layer; validated on the OSIC Pulmonary Fibrosis Progression Dataset and evaluated using the modified Laplace log-likelihood (-6.68).

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
5/9/2022
Last Updated:
5/9/2022

Operations

Data Inputs & Outputs

Network analysis

Outputs

    Publications

    Al Nazi Z, Rabbi Mashrur F, Islam MA, Saha S. Fibro-CoSANet: pulmonary fibrosis prognosis prediction using a convolutional self attention network. Physics in Medicine & Biology. 2021;66(22):225013. doi:10.1088/1361-6560/ac36a2. PMID:34736226.