Fibro-CoSANet
Fibro-CoSANet predicts prognosis of idiopathic pulmonary fibrosis (IPF) by modeling decline in forced vital capacity (FVC) from computed tomography (CT) images and demographic data using a multi-modal deep learning approach.
Key Features:
- End-to-end multi-modal learning: Integrates CT images and demographic information within a single trainable model.
- Data modalities: Uses computed tomography (CT) imaging paired with patient demographic data as inputs.
- Model architecture: Implements a convolutional neural network (CNN) framework for feature extraction and prediction.
- Attention mechanism: Incorporates a stacked attention layer to focus feature extraction on relevant data regions.
- Prediction target: Predicts decline in forced vital capacity (FVC) to estimate IPF prognosis.
- Validation dataset: Evaluated on the OSIC Pulmonary Fibrosis Progression Dataset.
- Evaluation metric: Reported a modified Laplace log-likelihood score of -6.68.
- Deep learning approach: Leverages deep learning to jointly process complex medical imaging and demographic features.
Scientific Applications:
- IPF prognosis: Estimates disease progression in idiopathic pulmonary fibrosis via FVC decline prediction.
- Clinical decision support: Provides quantitative prognostic estimates to inform treatment planning.
- Research on disease dynamics: Supports investigation of progression patterns and personalized treatment strategies in pulmonary fibrosis.
Methodology:
End-to-end multi-modal convolutional neural network integrating CT images and demographic information, augmented with a stacked attention layer; validated on the OSIC Pulmonary Fibrosis Progression Dataset and evaluated using the modified Laplace log-likelihood (-6.68).
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 5/9/2022
- Last Updated:
- 5/9/2022
Operations
Data Inputs & Outputs
Publications
Al Nazi Z, Rabbi Mashrur F, Islam MA, Saha S. Fibro-CoSANet: pulmonary fibrosis prognosis prediction using a convolutional self attention network. Physics in Medicine & Biology. 2021;66(22):225013. doi:10.1088/1361-6560/ac36a2. PMID:34736226.