FIMTrack

FIMTrack performs tracking and quantitative locomotion analysis of small animals such as Drosophila larvae and C. elegans from high-contrast FIM imaging.


Key Features:

  • High-Contrast Imaging Integration: Integrates with the FIM imaging system to operate on high-contrast images for accurate detection and tracking.
  • Versatile Tracking Strategies: Implements multiple tracking strategies tailored to different model organisms, locomotion types, and camera properties.
  • Stimuli-Based Analysis: Supports analysis of behavioral responses to external stimuli within recorded experiments.
  • Manual Tracking and Correction: Provides facilities for manual adjustment and correction of automated tracking results to improve accuracy.

Scientific Applications:

  • Developmental Biology: Quantifies locomotion phenotypes to study developmental processes in model organisms.
  • Neurobiology: Analyzes movement patterns to investigate neural control of behavior.
  • Behavioral Ecology: Measures locomotor behavior for studies of ecological and ethological questions.
  • Stimulus-Response Assays: Assesses behavioral changes in response to environmental or experimental stimuli.

Methodology:

FIMTrack employs advanced tracking and analysis algorithms explicitly developed to handle varying locomotion types and imaging conditions.

Topics

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
workflow
Operating Systems:
Linux, Mac
Programming Languages:
C++
Added:
6/26/2018
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Risse B, Berh D, Otto N, Klämbt C, Jiang X. FIMTrack: An open source tracking and locomotion analysis software for small animals. PLOS Computational Biology. 2017;13(5):e1005530. doi:10.1371/journal.pcbi.1005530. PMID:28493862. PMCID:PMC5444858.

Documentation

Downloads