fishplot

fishplot is a software tool for visualizing clonal structural changes over time to describe tumor evolution, usable for diagnoses and publications.

Topic

Tomography;Oncology

Detail

  • Operation: Probabilistic data generation

  • Software interface: Command-line user interface

  • Language: R

  • License: Apache-2.0

  • Cost: Free

  • Version name: 0.5

  • Credit: The National Human Genome Research Institute.

  • Input: -

  • Output: Plots

  • Contact: Christopher A. Miller c.a.miller@wustl.edu

  • Collection: -

  • Maturity: Emerging

Publications

  • Visualizing tumor evolution with the fishplot package for R.
  • Miller CA, McMichael J, Dang HX, Maher CA, Ding L, Ley TJ, Mardis ER, Wilson RK. Visualizing tumor evolution with the fishplot package for R. BMC Genomics. 2016 Nov 7;17(1):880. doi: 10.1186/s12864-016-3195-z. PMID: 27821060; PMCID: PMC5100182.
  • https://doi.org/10.1186/s12864-016-3195-z
  • PMID: 27821060
  • PMC: PMC5100182

Download and documentation

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