fluEvidenceSynthesis
fluEvidenceSynthesis reconstructs influenza transmission dynamics from surveillance data and evaluates intervention strategies using Bayesian inference, forward modeling, and cost-effectiveness analysis.
Key Features:
- Bayesian Inference for Parameter Estimation: Uses a Bayesian framework to infer parameters governing influenza dynamics and to incorporate prior knowledge and uncertainty.
- Data Integration: Integrates surveillance data with prior knowledge to inform parameter estimation and model calibration.
- Forward Modeling of Intervention Outcomes: Simulates intervention scenarios to predict impacts on disease burden and outbreak dynamics.
- Cost-Effectiveness Analysis: Performs economic evaluation comparing financial costs and health benefits of proposed interventions.
Scientific Applications:
- Influenza vaccination strategy evaluation (United Kingdom methodologies): Applies methodologies used in the United Kingdom to inform and evaluate influenza vaccination strategies.
- Intervention effectiveness assessment: Assesses the epidemiological impact of vaccination and other public health interventions on influenza burden.
- Resource allocation and policy evaluation: Compares costs and health outcomes to support optimization of resource allocation and public health decision-making.
- Adaptation to other diseases and data sources: Can be applied to different diseases and surveillance data sources to extend evidence synthesis for public health research.
Methodology:
Integrates surveillance data with prior knowledge; uses Bayesian inference to reconstruct influenza spread dynamics and estimate parameters; employs forward modeling to simulate intervention scenarios; and applies cost-effectiveness analysis to evaluate financial implications and health benefits.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 6/12/2018
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Pathway or network analysis
Publications
van Leeuwen E, Klepac P, Thorrington D, Pebody R, Baguelin M. fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks. PLOS Computational Biology. 2017;13(11):e1005838. doi:10.1371/journal.pcbi.1005838. PMID:29155812. PMCID:PMC5714397.