fluEvidenceSynthesis

fluEvidenceSynthesis reconstructs influenza transmission dynamics from surveillance data and evaluates intervention strategies using Bayesian inference, forward modeling, and cost-effectiveness analysis.


Key Features:

  • Bayesian Inference for Parameter Estimation: Uses a Bayesian framework to infer parameters governing influenza dynamics and to incorporate prior knowledge and uncertainty.
  • Data Integration: Integrates surveillance data with prior knowledge to inform parameter estimation and model calibration.
  • Forward Modeling of Intervention Outcomes: Simulates intervention scenarios to predict impacts on disease burden and outbreak dynamics.
  • Cost-Effectiveness Analysis: Performs economic evaluation comparing financial costs and health benefits of proposed interventions.

Scientific Applications:

  • Influenza vaccination strategy evaluation (United Kingdom methodologies): Applies methodologies used in the United Kingdom to inform and evaluate influenza vaccination strategies.
  • Intervention effectiveness assessment: Assesses the epidemiological impact of vaccination and other public health interventions on influenza burden.
  • Resource allocation and policy evaluation: Compares costs and health outcomes to support optimization of resource allocation and public health decision-making.
  • Adaptation to other diseases and data sources: Can be applied to different diseases and surveillance data sources to extend evidence synthesis for public health research.

Methodology:

Integrates surveillance data with prior knowledge; uses Bayesian inference to reconstruct influenza spread dynamics and estimate parameters; employs forward modeling to simulate intervention scenarios; and applies cost-effectiveness analysis to evaluate financial implications and health benefits.

Topics

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
6/12/2018
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

van Leeuwen E, Klepac P, Thorrington D, Pebody R, Baguelin M. fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks. PLOS Computational Biology. 2017;13(11):e1005838. doi:10.1371/journal.pcbi.1005838. PMID:29155812. PMCID:PMC5714397.

PMID: 29155812
PMCID: PMC5714397
Funding: - National Institute for Health Research: HPRU - Medical Research Council: MR/J008761/1 - Horizon 2020: 634446

Documentation

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