fluff

fluff is a software tool to investigate, cluster, and visualize high-throughput sequencing data mapped to a reference genome. The fluff package includes functions to generate images of heatmaps, band plots, and genome browser-like profiles.

Topic

RNA-seq;Sequence analysis;Comparative genomics

Detail

  • Operation: Sequence analysis

  • Software interface: Command-line user interface

  • Language: Python

  • License: The MIT licence

  • Cost: Free

  • Version name: 3.0.4

  • Credit: The Netherlands Organisation for Scientific Research, the US National Institutes of Health.

  • Input: BED, BAM

  • Output: -

  • Contact: Simon J. van Heeringen s.vanheeringen@science.ru.nl

  • Collection: -

  • Maturity: Mature

Publications

  • fluff: exploratory analysis and visualization of high-throughput sequencing data.
  • Georgiou G, van Heeringen SJ. fluff: exploratory analysis and visualization of high-throughput sequencing data. PeerJ. 2016 Jul 19;4:e2209. doi: 10.7717/peerj.2209. PMID: 27547532; PMCID: PMC4957989.
  • https://doi.org/10.7717/peerj.2209
  • PMID: 27547532
  • PMC: PMC4957989

Download and documentation

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