FoCuS-point
FoCuS-point analyzes fluorescence correlation spectroscopy (FCS) data to quantify molecular mobility and interaction dynamics in STED-FCS experiments using time-correlated single-photon counting (TCSPC) and time-gated detection.
Key Features:
- TCSPC correlation algorithms: Implements time-correlated single-photon counting correlation algorithms for high-temporal-resolution analysis of fluorescence events.
- Time-gated filtering: Applies time-gated filtering to select specific photon arrival time windows and improve signal-to-noise in time-gated STED-FCS data.
- STED-FCS compatibility: Supports analysis of super-resolution STED microscopy combined with FCS, including experiments employing time-gated detection.
- Advanced fitting algorithms: Provides sophisticated fitting of correlation curves to extract diffusion coefficients and kinetic parameters.
- Batch data processing: Enables processing of multiple FCS data files for high-throughput analysis.
- Data visualization: Produces visual representations of correlation functions and fitted results for interpretation of molecular dynamics.
- Implementation: Implemented in Python.
Scientific Applications:
- Super-resolution diffusion measurements: Quantifies diffusion and mobility at the nanoscale in STED-FCS experiments.
- Protein interactions and kinetics: Extracts interaction dynamics and receptor–ligand binding kinetics from correlation and fitting analyses.
- Live-cell molecular dynamics: Measures molecular mobility and interaction dynamics within living cells using time-gated FCS approaches.
Methodology:
Uses time-correlated single-photon counting (TCSPC) correlation algorithms, time-gated filtering, correlation-curve fitting via advanced fitting algorithms, batch data processing, and data visualization.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 8/3/2017
- Last Updated:
- 12/10/2018
Operations
Publications
Waithe D, et al. FoCuS-point: software for STED fluorescence correlation and time-gated single photon counting. Bioinformatics. 2016; 32:958-60. doi: 10.1093/bioinformatics/btv687
PMID: 26589275