FR-UNet

FR-UNet segments retinal vessels and coronary angiographs using a full-resolution convolutional network combined with a dual-threshold iterative algorithm to detect thin, low-contrast vascular structures.


Key Features:

  • Full-Resolution Network (FR-UNet): Maintains full image resolution throughout the segmentation process via a full-resolution architecture.
  • Multiresolution Convolution Interactive Mechanism: Expands horizontally and vertically to preserve multiresolution spatial information across stages.
  • Feature Aggregation Module: Integrates multiscale feature maps from adjacent stages to enrich high-level contextual information.
  • Modified Residual Blocks: Continuously learn multiresolution representations to produce pixel-level accuracy prediction maps.
  • Dual-Threshold Iterative Algorithm (DTI): Iteratively adjusts thresholds to refine segmentation and recover weak vessel signals.
  • Weak Vessel Pixel Extraction: Identifies and extracts low-contrast vessel pixels to improve vessel connectivity.
  • Sensitivity Enhancement: Increases detection sensitivity for thin and subtle vascular structures.

Scientific Applications:

  • Retinal Vessel Datasets: Evaluated on DRIVE, CHASE_DB1, and STARE.
  • Coronary Angiography Datasets: Evaluated on DCA1 and CHUAC.
  • Benchmarking Metrics: Demonstrated superior sensitivity (Sen), area under the curve (AUC), F1 score, and intersection over union (IOU) while using fewer parameters than comparison models.

Methodology:

The method combines a full-resolution convolutional network with multiresolution convolution interactive mechanisms, feature aggregation modules and modified residual blocks to preserve spatial information and produce pixel-level prediction maps, together with a dual-threshold iterative algorithm that iteratively adjusts thresholds to extract weak vessel pixels and improve connectivity and sensitivity.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
10/3/2022
Last Updated:
11/24/2024

Operations

Publications

Liu W, Yang H, Tian T, Cao Z, Pan X, Xu W, Jin Y, Gao F. Full-Resolution Network and Dual-Threshold Iteration for Retinal Vessel and Coronary Angiograph Segmentation. IEEE Journal of Biomedical and Health Informatics. 2022;26(9):4623-4634. doi:10.1109/jbhi.2022.3188710. PMID:35788455.

PMID: 35788455
Funding: - National Key Research and Development Program of China: 2018AAA0102600 - National Natural Science Foundation of China: 62002082