FR-UNet
FR-UNet segments retinal vessels and coronary angiographs using a full-resolution convolutional network combined with a dual-threshold iterative algorithm to detect thin, low-contrast vascular structures.
Key Features:
- Full-Resolution Network (FR-UNet): Maintains full image resolution throughout the segmentation process via a full-resolution architecture.
- Multiresolution Convolution Interactive Mechanism: Expands horizontally and vertically to preserve multiresolution spatial information across stages.
- Feature Aggregation Module: Integrates multiscale feature maps from adjacent stages to enrich high-level contextual information.
- Modified Residual Blocks: Continuously learn multiresolution representations to produce pixel-level accuracy prediction maps.
- Dual-Threshold Iterative Algorithm (DTI): Iteratively adjusts thresholds to refine segmentation and recover weak vessel signals.
- Weak Vessel Pixel Extraction: Identifies and extracts low-contrast vessel pixels to improve vessel connectivity.
- Sensitivity Enhancement: Increases detection sensitivity for thin and subtle vascular structures.
Scientific Applications:
- Retinal Vessel Datasets: Evaluated on DRIVE, CHASE_DB1, and STARE.
- Coronary Angiography Datasets: Evaluated on DCA1 and CHUAC.
- Benchmarking Metrics: Demonstrated superior sensitivity (Sen), area under the curve (AUC), F1 score, and intersection over union (IOU) while using fewer parameters than comparison models.
Methodology:
The method combines a full-resolution convolutional network with multiresolution convolution interactive mechanisms, feature aggregation modules and modified residual blocks to preserve spatial information and produce pixel-level prediction maps, together with a dual-threshold iterative algorithm that iteratively adjusts thresholds to extract weak vessel pixels and improve connectivity and sensitivity.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 10/3/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Liu W, Yang H, Tian T, Cao Z, Pan X, Xu W, Jin Y, Gao F. Full-Resolution Network and Dual-Threshold Iteration for Retinal Vessel and Coronary Angiograph Segmentation. IEEE Journal of Biomedical and Health Informatics. 2022;26(9):4623-4634. doi:10.1109/jbhi.2022.3188710. PMID:35788455.