FragMAXapp
FragMAXapp provides processing and visualization of macromolecular crystallography data focused on Crystallographic Fragment Screening (CFS) for fragment screening campaigns in drug discovery.
Key Features:
- Data processing: Implements multiple methods for processing macromolecular crystallography datasets.
- Structure visualization: Visualizes macromolecular crystallography data and summarizes outputs from analyses.
- Fragment screening support: Emphasizes Crystallographic Fragment Screening (CFS) workflows for fragment screening campaigns in drug discovery.
- Refinement and ligand identification: Supports structure refinement and ligand identification methods for fragment-bound complexes.
- Project management for CFS: Organizes and manages outputs and metadata from CFS projects.
- High-throughput data handling: Handles large-scale datasets arising from automated, high-throughput macromolecular crystallography beamlines.
- Integration with facility computing: Leverages computing infrastructure available at facilities such as MAX IV Laboratory.
Scientific Applications:
- Early-stage drug discovery: Enables identification and characterization of fragment hits in Crystallographic Fragment Screening campaigns.
- High-throughput crystallography analysis: Processes and summarizes large numbers of macromolecular crystallography datasets from beamlines.
- Ligand modeling and validation: Supports refinement and ligand identification workflows for validating fragment binding in crystal structures.
Methodology:
Computational steps explicitly include multiple methods for data processing, structure refinement, ligand identification, and summarization of outputs executed using computing infrastructure at MAX IV Laboratory.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python, JavaScript
- Added:
- 11/8/2021
- Last Updated:
- 11/8/2021
Operations
Publications
Lima GMA, Jagudin E, Talibov VO, Benz LS, Marullo C, Barthel T, Wollenhaupt J, Weiss MS, Mueller U. <i>FragMAXapp</i>: crystallographic fragment-screening data-analysis and project-management system. Acta Crystallographica Section D Structural Biology. 2021;77(6):799-808. doi:10.1107/s2059798321003818. PMID:34076593. PMCID:PMC8171072.