FragMAXapp

FragMAXapp provides processing and visualization of macromolecular crystallography data focused on Crystallographic Fragment Screening (CFS) for fragment screening campaigns in drug discovery.


Key Features:

  • Data processing: Implements multiple methods for processing macromolecular crystallography datasets.
  • Structure visualization: Visualizes macromolecular crystallography data and summarizes outputs from analyses.
  • Fragment screening support: Emphasizes Crystallographic Fragment Screening (CFS) workflows for fragment screening campaigns in drug discovery.
  • Refinement and ligand identification: Supports structure refinement and ligand identification methods for fragment-bound complexes.
  • Project management for CFS: Organizes and manages outputs and metadata from CFS projects.
  • High-throughput data handling: Handles large-scale datasets arising from automated, high-throughput macromolecular crystallography beamlines.
  • Integration with facility computing: Leverages computing infrastructure available at facilities such as MAX IV Laboratory.

Scientific Applications:

  • Early-stage drug discovery: Enables identification and characterization of fragment hits in Crystallographic Fragment Screening campaigns.
  • High-throughput crystallography analysis: Processes and summarizes large numbers of macromolecular crystallography datasets from beamlines.
  • Ligand modeling and validation: Supports refinement and ligand identification workflows for validating fragment binding in crystal structures.

Methodology:

Computational steps explicitly include multiple methods for data processing, structure refinement, ligand identification, and summarization of outputs executed using computing infrastructure at MAX IV Laboratory.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge (with restrictions)
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python, JavaScript
Added:
11/8/2021
Last Updated:
11/8/2021

Operations

Publications

Lima GMA, Jagudin E, Talibov VO, Benz LS, Marullo C, Barthel T, Wollenhaupt J, Weiss MS, Mueller U. <i>FragMAXapp</i>: crystallographic fragment-screening data-analysis and project-management system. Acta Crystallographica Section D Structural Biology. 2021;77(6):799-808. doi:10.1107/s2059798321003818. PMID:34076593. PMCID:PMC8171072.

PMID: 34076593
PMCID: PMC8171072
Funding: - Vetenskapsrådet: 2018-05973, 2018-06454 - VINNOVA: 2019-02567

Links