FrameXplore
FrameXplore is a Google Colab notebook that extends ColabFold to automatically identify and correct disulfide bonds in cysteine‑rich protein structures. After a standard ColabFold prediction, it extracts all cysteine residues, computes Cα–Cα and S–S distances, identifies true disulfide bonds using geometric cutoffs (Cα–Cα < 6.5 Å, S–S < 2.5 Å), writes a corrected PDB with proper CONECT records, and provides an interactive 3D view.
Topics
Details
- License:
- MIT
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- Python
- Added:
- 5/13/2026
- Last Updated:
- 5/13/2026
Operations
Publications
Documentation
General
https://github.com/Vidhusv/FRAMEXPLORER/blob/main/README.mdQuick start guide, example test case, methodology explanation, citation, and repository contents
Downloads
- BinariesVersion: 1.0.0https://raw.githubusercontent.com/Vidhusv/FRAMEXPLORER/main/FrameXplore.ipynbDirect download of the Colab notebook (.ipynb file). Can be run locally or uploaded to Google Colab.
- Source codeVersion: 1.0.0https://github.com/Vidhusv/FRAMEXPLORER/archive/refs/heads/main.zipLatest version of the complete repository as a ZIP file
Links
Repository
https://github.com/Vidhusv/FRAMEXPLORER(GitHub repository with source code, documentation, and logo)
Issue tracker
https://github.com/Vidhusv/FRAMEXPLORER/issues(Report bugs, suggest features, or ask questions)