frogs_affiliations_stat
frogs_affiliations_stat performs statistical analysis of large-scale next-generation DNA sequencing (NGS) datasets to support reproducible computational genomics and biomedical research.
Key Features:
- NGS data support: Processes datasets generated by next-generation DNA sequencing for downstream statistical analysis.
- Statistical and computational methodologies: Implements sophisticated statistical and computational methodologies tailored for large-scale biomedical datasets.
- Galaxy integration: Integrates with the Galaxy project to execute analyses and associate results with workflow context.
- Provenance tracking: Automatically records computational provenance and workflow details to support reproducibility.
- Scalability: Designed for computation-intensive analyses and operation on substantial computational resources.
Scientific Applications:
- Large-scale genomics: Analysis of high-throughput genomic datasets produced by NGS experiments.
- Biomedical research: Enables computationally intensive analyses used in biomedical research workflows.
- Reproducible research and publication: Supports reproducible computational workflows for inspection, publication, and reuse of results.
Methodology:
Applies statistical and computational methodologies to NGS datasets, records workflow provenance within Galaxy, and is intended for computation-intensive execution that requires substantial computational resources.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Taxonomic classification
Inputs
Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.