frogs_affiliations_stat
frogs_affiliations_stat performs statistical analysis of large-scale next-generation DNA sequencing (NGS) datasets to support reproducible computational genomics and biomedical research.
Key Features:
- NGS data support: Processes datasets generated by next-generation DNA sequencing for downstream statistical analysis.
- Statistical and computational methodologies: Implements sophisticated statistical and computational methodologies tailored for large-scale biomedical datasets.
- Galaxy integration: Integrates with the Galaxy project to execute analyses and associate results with workflow context.
- Provenance tracking: Automatically records computational provenance and workflow details to support reproducibility.
- Scalability: Designed for computation-intensive analyses and operation on substantial computational resources.
Scientific Applications:
- Large-scale genomics: Analysis of high-throughput genomic datasets produced by NGS experiments.
- Biomedical research: Enables computationally intensive analyses used in biomedical research workflows.
- Reproducible research and publication: Supports reproducible computational workflows for inspection, publication, and reuse of results.
Methodology:
Applies statistical and computational methodologies to NGS datasets, records workflow provenance within Galaxy, and is intended for computation-intensive execution that requires substantial computational resources.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.