FUn

FUn provides interactive 3D visualization for record-level inspection and exploration of large scientific datasets.


Key Features:

  • Interactive 3D Visualization: Supports interactive 3D visualization of datasets with more than 100,000 data points.
  • Scalability: Leverages modern graphical processing units (GPUs) to render millions of data points efficiently on consumer hardware including laptops, tablets, and mobile phones.
  • Record-level Inspection: Enables detailed inspection of individual records within large datasets, beyond summary statistics or reduced representations.
  • Client-Server Architecture: Comprises Faerun (client) for rendering and Underdark (server) for data management and serving.
  • Preprocessing Toolchain: Includes Lore.js and a comprehensive data preprocessing toolchain for preparing large datasets for visualization.

Scientific Applications:

  • Cheminformatics and Drug Discovery: Applied to large-scale chemical patent data such as SureChEMBL (over 17 million chemical compounds), supporting visualization of large compound libraries and complex molecular data.

Methodology:

FUn uses a client-server architecture where Faerun handles rendering of interactive 3D visualizations optimized for modern GPUs and Underdark performs data preprocessing and serves datasets; the framework incorporates Lore.js and a dedicated data preprocessing toolchain.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript, Python
Added:
6/24/2018
Last Updated:
11/25/2024

Operations

Publications

Probst D, Reymond J. FUn: a framework for interactive visualizations of large, high-dimensional datasets on the web. Bioinformatics. 2017;34(8):1433-1435. doi:10.1093/bioinformatics/btx760. PMID:29186333.

PMID: 29186333
Funding: - Swiss National Science Foundation: NCCR TransCure

Documentation