FungiExp

FungiExp provides integrated access to and analysis of fungal gene expression and alternative splicing using 35,821 curated RNA-seq experiments across 220 fungal species.

Key Features:

• Extensive Dataset: Contains 35,821 curated RNA-seq experiments covering 220 fungal species.
• Alternative Splicing Focus: Provides detailed profiles of alternative splicing across fungal species.
• Customizable Analyses: Enables definition of experimental groups to perform differential and specific expression analyses.
• Data Visualization: Offers data visualization tools for interpretation of expression and splicing results.
• Uniform Data Processing: Applies a uniform data processing pipeline across datasets to enable consistent comparative analyses.

Scientific Applications:

• Gene Expression Studies: Investigating gene expression variation across fungal species and experimental conditions using RNA-seq data.
• Alternative Splicing Analysis: Exploring mechanisms and evolutionary significance of alternative splicing in fungi.
• Comparative Genomics: Conducting comparative transcriptomic analyses to study genetic diversity and adaptation among fungi.

Methodology:

Processes curated RNA-seq datasets through a uniform data processing pipeline and performs differential and specific expression analyses using customizable experimental groups.