Genomics Notebook (g2nb)

Genomics to Notebook (g2nb) combines the JupyterLab notebook system with widely-used bioinformatics platforms to present analyses and visualizations as notebook cells, making thousands of genomics methods available within the notebook metaphor and allowing notebooks to contain workflows utilizing multiple software packages on remote servers without programming.

Key Features:

• JupyterLab Integration: Combines the JupyterLab notebook system with widely-used bioinformatics platforms.
• Notebook Cell Presentation: Presents analyses and visualizations from bioinformatics platforms as cells in a notebook.
• Multi-Package Workflows: Allows notebooks to contain workflows utilizing multiple software packages on remote servers.
• Non-Programming Access: Makes thousands of genomics methods available without the need for programming.

Scientific Applications:

• Genomics Analysis: Enables non-programming scientists to perform genomics analyses using methods from platforms such as Galaxy and GenePattern.
• Workflow Integration: Supports construction of notebooks containing workflows that combine multiple bioinformatics software packages.

Methodology:

g2nb presents analyses and visualizations from bioinformatics platforms as cells within the JupyterLab notebook system, enabling remote execution of methods from multiple software packages.