GAIT
GAIT analyzes associations between gene expression and interval times between two events using multivariate survival methods that accommodate multiple censored events.
Key Features:
- Multivariate survival analysis: Leverages recent advancements in multivariate survival analysis to accommodate multiple censored events simultaneously.
- Interval-time gene expression analysis: Examines gene expression in relation to the timing between two biological or clinical events.
- Validation: Methods have been validated through simulation studies and analyses of real-world gene expression datasets.
Scientific Applications:
- Interval association studies: Investigates how gene expression levels correlate with the timing between two events such as disease onset and recurrence or diagnosis and subsequent intervention.
- Genetic marker identification: Supports identification of potential genetic markers associated with time-dependent outcomes and prognosis.
- Disease progression and treatment response: Applies to studies of disease progression, treatment response, and other time-dependent biological processes.
Methodology:
Implements multivariate survival analysis methods that accommodate multiple censored events and has been evaluated using simulation studies and analyses of real-world gene expression datasets.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Mac
- Programming Languages:
- R, C++
- Added:
- 7/1/2018
- Last Updated:
- 11/25/2024
Operations
Publications
Kim Y, Kang YS, Seok J. GAIT: Gene expression Analysis for Interval Time. Bioinformatics. 2018;34(13):2305-2307. doi:10.1093/bioinformatics/bty111. PMID:29509896.
PMID: 29509896
Funding: - National Research Foundation of Korea: NRF-2017R1C1B2002850