Galactic Circos
Galactic Circos generates circular visualizations for genomic analysis and other complex multidimensional datasets by wrapping the Circos plotting software within the Galaxy platform.
Key Features:
- Galaxy integration: Wraps Circos plotting software within Galaxy to enable execution and configuration of Circos jobs in the Galaxy environment.
- Circos plotting capabilities: Exposes Circos's plotting capabilities for creating complex circular representations of multidimensional data.
- Large-scale genomic data support: Handles large-scale genomic datasets and supports representation of gene interactions, chromosomal aberrations, and comparative genomics.
- Customization and extensibility: Provides downloadable Circos configuration files for manual specification and further customization of plots.
- Publication-quality outputs: Produces visualizations suitable for use as publication figures.
- Domain flexibility: Applicable across scientific domains that require circular or multidimensional data visualization beyond genomics.
Scientific Applications:
- Genomic research: Visualizing relationships between large datasets such as gene interactions, chromosomal aberrations, and comparative genomics.
- Systems biology: Representing multidimensional omics data and system-level relationships.
- Network analysis: Depicting complex network relationships and interactions.
- Other complex-data visualization: Supporting fields that require integration and visual representation of heterogeneous, multidimensional datasets.
Methodology:
Integration of Circos's plotting capabilities within Galaxy and generation/export of Circos configuration files to specify and customize circular plots.
Details
- License:
- MIT
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux
- Programming Languages:
- Perl, Python
- Added:
- 3/24/2020
- Last Updated:
- 11/24/2024
Operations
Publications
Rasche H, Hiltemann S. Galactic Circos: User-friendly Circos plots within the Galaxy platform. GigaScience. 2020;9(6). doi:10.1093/gigascience/giaa065. PMID:32530465. PMCID:PMC7291503.
Documentation
Downloads
- Source codehttps://github.com/galaxyproject/tools-iuc/tree/master/tools/circos
- Tool wrapper (Galaxy)Version: 0.69.8+galaxy4https://toolshed.g2.bx.psu.edu/view/iuc/circos/a64dc31ab7f2