GCdiscrimination
GCdiscrimination classifies gastric cancer (GC) by analyzing 58 routine blood biochemical indices from liquid biopsies to discriminate GC from other stomach diseases, other cancers, and healthy individuals.
Key Features:
- Integrated markers: Utilizes 58 routine blood biochemical indices as candidate markers for GC identification.
- Discrimination model: Constructs a random forest model that ranks and selects the top 17 indices, comprising eight routine blood indices (MO%, IG#, IG%, EO%, P-LCR, RDW-SD, HCT, RDW-CV) and nine biochemical indices (TP, AMY, GLO, CK, CHO, CK-MB, TG, ALB, γ-GGT).
- Performance metrics: Reports cross-validation performance with sensitivity 0.9067, specificity 0.9216, total accuracy 0.9138, and area under the curve (AUC) 0.9720.
- Rapid assessment: Enables rapid, real-time preliminary assessment of gastric cancer prior to invasive diagnostic procedures such as histological analysis or gastroscopy.
- Clinical correlations: Identifies correlations between GC and routine blood biochemical parameters to inform potential mechanistic insights, prevention programs, and surveillance management strategies.
Scientific Applications:
- Screening and preliminary diagnosis: Non-invasive classification of GC for preliminary screening using blood biochemical indices.
- Differential diagnosis: Discriminates GC from other stomach diseases, different cancers, and healthy individuals.
- Biomarker discovery: Prioritizes candidate blood-based biomarkers (including MO%, IG#, IG%, EO%, P-LCR, RDW-SD, HCT, RDW-CV, TP, AMY, GLO, CK, CHO, CK-MB, TG, ALB, γ-GGT) for further investigation.
- Surveillance and prevention: Supports development of surveillance management strategies and prevention programs informed by blood biochemical parameter correlations with GC.
Methodology:
Model training and feature ranking were performed using a random forest method on 58 routine blood biochemical indices, with model evaluation by cross-validation reporting the stated sensitivity, specificity, accuracy, and AUC.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/18/2021
- Last Updated:
- 1/22/2021
Operations
Publications
Wu J, Yang Y, Cheng L, Wu J, Xi L, Ma Y, Zhang P, Xu X, Zhang D, Li S. GCdiscrimination: identification of gastric cancer based on a milliliter of blood. Briefings in Bioinformatics. 2020;22(1):536-544. doi:10.1093/bib/bbaa006. PMID:32010933.
DOI: 10.1093/BIB/BBAA006
PMID: 32010933
Funding: - National Natural Science Foundation of China: 21405068, 21505061
- Central Universities of China: lzujbky-2017-103
- Lanzhou University: ldyyyn2018-30