gdtools_simulate-mutations

gdtools_simulate-mutations simulates random genetic mutations and generates files containing those mutations for testing and validating analyses of high-throughput sequencing data within the Galaxy framework.


Key Features:

  • Random Mutation Simulation: Generates datasets containing randomly placed genetic mutations to model sequence variation.
  • Mutation File Generation: Produces output files that record simulated mutations for downstream analysis and benchmarking.
  • Galaxy Integration: Integrates with the Galaxy framework and records computational provenance to support reproducible analyses.

Scientific Applications:

  • Biomedical Research: Enables modeling of genetic variation relevant to genetics, genomics, and studies informing personalized medicine.
  • Data Analysis and Validation: Provides simulated mutation datasets for testing and validating computational methods and algorithms applied to genomic data.

Methodology:

Leverages the Galaxy framework and integrates statistical and computational methods for generating random mutations in large-scale sequencing datasets.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Sequence mutation and randomisation

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Documentation

Links