Geneious
Geneious organizes and analyzes molecular sequence data and related biological data for genomic and protein research, enabling visualization and extensibility via a public API.
Key Features:
- Sequence organization and analysis: Provides organization and analysis of molecular sequences and related biological data.
- Integration of discovery and analysis tools: Integrates numerous industry-standard discovery and analysis tools within its framework.
- Interactive visualization: Generates interactive visualizations and produces publication-ready images.
- Public API and extensibility: Exposes a public application programming interface (API) to extend and customize the framework and create custom computational tools.
- Genomic and protein data management: Manages genomic and protein information for research workflows.
Scientific Applications:
- Life science sequence analysis: Facilitates organization and analysis of sequence data in life science research.
- Publication figures: Produces publication-ready images for presenting sequence and annotation data.
- Custom computational tool development: Enables developers to create bespoke computational tools and integrate them via the public API.
- Integration of external tools: Supports incorporation of industry-standard discovery and analysis tools into sequence analysis workflows.
Methodology:
Integrates industry-standard discovery and analysis tools, generates interactive publication-ready visualizations, organizes and analyzes molecular sequences, and exposes a public API for extensions and custom computational tools.
Topics
Details
- Maturity:
- Mature
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java
- Added:
- 1/13/2017
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Community profiling
Publications
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012;28(12):1647-1649. doi:10.1093/bioinformatics/bts199. PMID:22543367. PMCID:PMC3371832.