Geneious

Geneious organizes and analyzes molecular sequence data and related biological data for genomic and protein research, enabling visualization and extensibility via a public API.


Key Features:

  • Sequence organization and analysis: Provides organization and analysis of molecular sequences and related biological data.
  • Integration of discovery and analysis tools: Integrates numerous industry-standard discovery and analysis tools within its framework.
  • Interactive visualization: Generates interactive visualizations and produces publication-ready images.
  • Public API and extensibility: Exposes a public application programming interface (API) to extend and customize the framework and create custom computational tools.
  • Genomic and protein data management: Manages genomic and protein information for research workflows.

Scientific Applications:

  • Life science sequence analysis: Facilitates organization and analysis of sequence data in life science research.
  • Publication figures: Produces publication-ready images for presenting sequence and annotation data.
  • Custom computational tool development: Enables developers to create bespoke computational tools and integrate them via the public API.
  • Integration of external tools: Supports incorporation of industry-standard discovery and analysis tools into sequence analysis workflows.

Methodology:

Integrates industry-standard discovery and analysis tools, generates interactive publication-ready visualizations, organizes and analyzes molecular sequences, and exposes a public API for extensions and custom computational tools.

Topics

Details

Maturity:
Mature
Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Java
Added:
1/13/2017
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012;28(12):1647-1649. doi:10.1093/bioinformatics/bts199. PMID:22543367. PMCID:PMC3371832.

Documentation