GeneMeta
GeneMeta performs meta-analysis of high-throughput experimental data to integrate genomics and molecular biology datasets and enable statistical interpretation.
Key Features:
- Integration with R: Leverages the R programming language for statistical analysis and visualization of high-throughput experimental data.
- Interoperable Packages: Accesses Bioconductor's ecosystem of over 934 interoperable packages to apply diverse bioinformatic methods.
- Community-Driven Development: Is developed through contributions from an interdisciplinary scientific community that extends analytical capabilities.
- Formal Review and Testing: Benefits from Bioconductor's formal initial review process and continuous automated testing of packages for quality assurance.
Scientific Applications:
- Meta-analysis in genomics and molecular biology: Supports meta-analysis of high-throughput experimental data across genomics and molecular biology studies.
- Dataset integration: Enables integration of diverse datasets to identify patterns and insights not apparent from individual studies.
- Interdisciplinary research: Facilitates analyses that combine methods and data from multiple biological and computational disciplines.
Methodology:
Built within Bioconductor, GeneMeta utilizes R-based Bioconductor packages for statistical analysis and data interpretation, allowing researchers to apply various bioinformatic techniques to high-throughput experimental data.
Topics
Collections
Details
- License:
- Artistic-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.