geneplotter

geneplotter visualizes genomic data to facilitate interpretation of complex genomic and high-throughput datasets within the Bioconductor ecosystem.


Key Features:

  • Integration with Bioconductor: Built upon the Bioconductor framework and compatible with its ecosystem of 934 interoperable packages.
  • Plotting functions: Provides a suite of functions specifically tailored for plotting complex genomic datasets.
  • R-based implementation: Implemented in the statistical programming language R for statistical analysis and visualization.
  • Interoperability: Designed to interoperate with other Bioconductor packages to enable combined analytical approaches.

Scientific Applications:

  • Genomic visualization: Visualizing genomic data to support interpretation of complex biological information.
  • Pattern discovery: Generating detailed plots that elucidate patterns and relationships within genomic datasets.
  • High-throughput data exploration: Facilitating exploration of high-throughput datasets to aid hypothesis generation and validation.
  • Interdisciplinary research support: Providing a common visualization platform for use across different scientific domains.

Methodology:

Bioconductor packages, including geneplotter, undergo formal initial review and continuous automated testing.

Topics

Collections

Details

License:
Artistic-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

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