GeneticsDesign
GeneticsDesign performs power and sample-size calculations to support experimental design for genetics studies in genomics and molecular biology.
Key Features:
- Power and sample-size calculations: Provides functions for determining statistical power and required sample sizes for genetics studies.
- Integration with Bioconductor: Interoperates with Bioconductor packages for incorporation into broader genomic data analysis workflows handling high-throughput data.
- R-based framework: Implements analysis within the R environment for statistical computation and visualization.
Scientific Applications:
- Genome-wide association studies (GWAS): Supports planning and sample-size assessment for GWAS to evaluate power to detect genetic associations.
- Linkage analyses: Assists in estimating power and sample-size requirements for linkage studies.
- High-throughput genomics experimental design: Informs sample-size and power considerations for experiments generating high-throughput genomic or molecular biology data.
Methodology:
Statistical modeling of genetic data scenarios and power/sample-size calculations grounded in established statistical principles.
Topics
Collections
Details
- License:
- GPL-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.