Genome Projector
Genome Projector provides interactive, multi-scale representations of genomic data to facilitate exploration and integration of genome sequences and biochemical pathway information.
Key Features:
- Multiple Views: Circular genome map, traditional (linear) genome map, biochemical pathways map, and DNA walk map for distinct representations and analyses of genomic information.
- Searchable Database: Search functionality to locate specific genomic features and datasets within the platform's repository.
- Genomic Coverage: Includes support for 320 bacterial genomes for microbial genomics analyses.
Scientific Applications:
- Genomic Visualization: Visualizing complex genomic structures and relationships across whole genomes and local regions.
- Multi-scale Exploration: Exploring multi-layered biological information across molecular to -omics scales.
- Functional Genomics Integration: Integrating genomic data with biochemical pathways to study functional relationships and interactions.
- Comparative Bacterial Genomics: Conducting comparative analyses of bacterial genomes.
Methodology:
Genome Projector uses Asynchronous JavaScript and XML (AJAX) and integrates the Google Maps API for zoomable visualization functionality.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- JavaScript, Perl
- Added:
- 8/3/2017
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Genome visualisation
Outputs
Publications
Arakawa K, Tamaki S, Kono N, Kido N, Ikegami K, Ogawa R, Tomita M. Genome Projector: zoomable genome map with multiple views. BMC Bioinformatics. 2009;10(1). doi:10.1186/1471-2105-10-31. PMID:19166610. PMCID:PMC2636772.