GenomeDiver
GenomeDiver integrates structured Human Phenotype Ontology (HPO) phenotypic data with clinical genomic sequencing to prioritize candidate genes and support genotype interpretation for medical genomic diagnosis.
Key Features:
- Phenotype-Guided Genomic Interpretation: Leverages the Human Phenotype Ontology (HPO) to document patient phenotypic features and prioritize genes for diagnostic interpretation.
- Integration with Clinical Genomic Sequencing: Integrates structured phenotypic annotations with clinical genomic sequencing data to support variant and genotype interpretation.
- Reverse Phenotyping: Prompts reverse phenotyping to enrich and expand structured HPO annotations used during variant and gene prioritization.
- Translation of Clinical Observations to HPO: Translates clinician observations into HPO terms to convey standardized phenotypic information to diagnostic laboratories for genomic interpretation.
Scientific Applications:
- Genomic Diagnostics: Supports clinical genomic diagnostics by improving precision in diagnosing genetic disorders through HPO-informed gene prioritization.
- Research and Development: Enables simulation and evaluation of genomic testing scenarios to assess impact on diagnostic outcomes.
Methodology:
Uses Human Phenotype Ontology (HPO) terms to standardize patient phenotypic features and integrates these structured phenotypes with clinical genomic sequencing to prioritize candidate genes and prompt reverse phenotyping.
Topics
Details
- Tool Type:
- command-line tool
- Added:
- 1/18/2021
- Last Updated:
- 1/22/2021
Operations
Publications
Pearson N, Stolte C, Shi K, Beren F, Abul-Husn NS, Bertier G, Brown K, Odgis JA, Suckiel SA, Horowitz CR, Wasserstein M, Gelb BD, Kenny EE, Gagnon C, Jobanputra V, Bloom T, Greally JM. GenomeDiver: A platform for phenotype-guided medical genomic diagnosis. Unknown Journal. 2020. doi:10.1101/2020.11.22.20236430.