GenomeDiver

GenomeDiver integrates structured Human Phenotype Ontology (HPO) phenotypic data with clinical genomic sequencing to prioritize candidate genes and support genotype interpretation for medical genomic diagnosis.


Key Features:

  • Phenotype-Guided Genomic Interpretation: Leverages the Human Phenotype Ontology (HPO) to document patient phenotypic features and prioritize genes for diagnostic interpretation.
  • Integration with Clinical Genomic Sequencing: Integrates structured phenotypic annotations with clinical genomic sequencing data to support variant and genotype interpretation.
  • Reverse Phenotyping: Prompts reverse phenotyping to enrich and expand structured HPO annotations used during variant and gene prioritization.
  • Translation of Clinical Observations to HPO: Translates clinician observations into HPO terms to convey standardized phenotypic information to diagnostic laboratories for genomic interpretation.

Scientific Applications:

  • Genomic Diagnostics: Supports clinical genomic diagnostics by improving precision in diagnosing genetic disorders through HPO-informed gene prioritization.
  • Research and Development: Enables simulation and evaluation of genomic testing scenarios to assess impact on diagnostic outcomes.

Methodology:

Uses Human Phenotype Ontology (HPO) terms to standardize patient phenotypic features and integrates these structured phenotypes with clinical genomic sequencing to prioritize candidate genes and prompt reverse phenotyping.

Topics

Details

Tool Type:
command-line tool
Added:
1/18/2021
Last Updated:
1/22/2021

Operations

Publications

Pearson N, Stolte C, Shi K, Beren F, Abul-Husn NS, Bertier G, Brown K, Odgis JA, Suckiel SA, Horowitz CR, Wasserstein M, Gelb BD, Kenny EE, Gagnon C, Jobanputra V, Bloom T, Greally JM. GenomeDiver: A platform for phenotype-guided medical genomic diagnosis. Unknown Journal. 2020. doi:10.1101/2020.11.22.20236430.